STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2870Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859. (127 aa)    
Predicted Functional Partners:
DVU_1261
Conserved domain protein; Identified by similarity to SP:P45754.
  
   0.889
DVU_2851
Tail protein, putative; Identified by similarity to GP:19483757.
  
 
 0.782
DVU_2872
Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
     
 0.782
DVU_2871
Identified by match to protein family HMM PF01343.
       0.780
DVU_2873
Hypothetical protein; Identified by Glimmer2; putative.
       0.776
DVU_2869
Major head protein; Identified by match to protein family HMM PF03864.
       0.770
DVU_2867
Holin; Identified by match to protein family HMM TIGR01593.
       0.768
DVU_2868
Hypothetical protein; Identified by Glimmer2; putative.
       0.762
DVU_1490
Tail tape measure protein, putative.
  
    0.731
DVU_0218
Tail protein, putative; Identified by similarity to GP:19483757.
  
 
 0.724
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.