Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2871Identified by match to protein family HMM PF01343. (439 aa)    
Predicted Functional Partners:
DVU_2872
Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
 
  
 0.894
DVU_2869
Major head protein; Identified by match to protein family HMM PF03864.
 
    0.839
DVU_2867
Holin; Identified by match to protein family HMM TIGR01593.
  
    0.785
DVU_2868
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.783
DVU_2870
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
     
 0.779
DVU_2873
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.778
DVU_2866
Conserved hypothetical protein; Identified by similarity to GP:6714967; match to protein family HMM PF05838.
  
    0.730
DVU_2865
Lipoprotein, putative.
  
    0.699
DVU_2859
Tail sheath protein, putative; Identified by similarity to SP:P79678.
  
    0.674
DVU_2861
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.674
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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