Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2879Conserved hypothetical protein; Identified by similarity to OMNI:CC3049. (518 aa)    
Predicted Functional Partners:
DVU_2876
Terminase, large subunit, putative; Identified by similarity to GP:13361094.
 
    0.817
DVU_2881
Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.
 
    0.781
DVU_2852
Tail protein, putative; Identified by similarity to GP:19483756.
  
    0.758
DVU_0189
Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.
 
    0.750
DVU_2878
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
  
    0.749
DVU_0192
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
   
    0.748
DVU_0194
Terminase, large subunit, putative; Identified by similarity to GP:6723224.
  
    0.727
DVU_0804
Sigma-54 dependent transcriptional regulator/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.
   
    0.718
DVU_2185
Terminase, large subunit, putative.
  
    0.715
DVU_2591
Tail fiber assembly protein, putative.
   
    0.708
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (18%) [HD]