STRINGSTRING
DVU_2881 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2881" - Phage-plasmid primase, P4 family in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2881Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613 (561 aa)    
Predicted Functional Partners:
DVU_2878
Methyltransferase; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family (452 aa)
 
          0.787
DVU_0192
Methyltransferase; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family (452 aa)
 
          0.787
DVU_1503
Terminase, large subunit; Identified by match to protein family HMM PF03354 (565 aa)
 
          0.741
DVU_1502
Portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 (419 aa)
 
          0.732
DVU_1500
Major capsid protein, HK97 family; Identified by match to protein family HMM TIGR01554 (398 aa)
 
        0.731
DVU_1504
Terminase, small subunit; Identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558 (155 aa)
 
        0.719
DVU_1505
Holin, putative; Identified by match to protein family HMM PF01844 (132 aa)
 
          0.716
DVU_2171
Portal protein; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539 (517 aa)
 
     
  0.644
DVU_1501
Identified by match to protein family HMM PF00574 (244 aa)
 
          0.629
DVU_2872
Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539 (566 aa)
 
     
  0.627
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (17%) [HD]