Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_2889Identified by match to protein family HMM PF02632. (182 aa)    
Predicted Functional Partners:
DVU_2888
Cobalt ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:Q05596; match to protein family HMM PF00005.
 
 
 0.974
DVU_1057
Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.
  
 
 0.914
DVU_1056
Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
   
 
 0.908
birA
birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
   
 0.854
DVU_2908
Hypothetical protein; Identified by Glimmer2; putative.
  
 
  0.853
bioD
Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.615
DVU_2890
Conserved domain protein.
       0.568
DVU_2226
acetyl-CoA carboxylase, biotin carboxylase, putative; Identified by match to protein family HMM PF00289; match to protein family HMM PF02786.
 
     0.564
DVU_1835
biotin--acetyl-CoA-carboxylase ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121.
 
   
 0.542
nikR
Nickel responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
       0.531
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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