Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
nikRNickel responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. (139 aa)    
Predicted Functional Partners:
DVU_1509
Conserved hypothetical protein; Identified by similarity to GP:21913207.
  
 
 0.933
folE2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
    0.829
DVU_2890
Conserved domain protein.
  
    0.768
birA
birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.693
DVU_2893
Flagellar basal-body rod protein, putative; Identified by similarity to SP:P75935; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family.
       0.646
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
      
 0.630
hypB
Hydrogenase accessory protein HypB; Identified by similarity to SP:P24190; match to protein family HMM PF01495; match to protein family HMM TIGR00073.
  
  
 0.606
cbiG
Cobalamin biosynthesis protein CbiG; Identified by similarity to SP:Q05631; match to protein family HMM PF01890.
      
 0.601
cbiM
Cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891.
 
   
 0.596
DVU_1057
Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.
 
   
 0.578
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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