Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2897Conserved hypothetical protein; Identified by similarity to SP:O67039; match to protein family HMM PF01875; Belongs to the MEMO1 family. (329 aa)    
Predicted Functional Partners:
DVU_0739
Conserved hypothetical protein TIGR00296; Identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296.
    0.992
DVU_1404
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
     0.969
DVU_0889
Phosphonopyruvate decarboxylase-related protein; Identified by match to protein family HMM PF01676.
  
     0.691
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
  
    0.561
DVU_2898
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MM1125.
  
    0.531
DVU_2894
Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
  
    0.506
mqnC
Radical SAM domain protein; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2).
   
   0.428
DVU_2895
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.410
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.