Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0192 | DVU_2878 | DVU_0192 | DVU_2878 | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | 0.880 |
| DVU_0192 | birA | DVU_0192 | DVU_2557 | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.479 |
| DVU_0192 | polA | DVU_0192 | DVU_0496 | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | DNA polymerase I; Identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | 0.532 |
| DVU_0192 | recA | DVU_0192 | DVU_1090 | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.417 |
| DVU_0192 | topA | DVU_0192 | DVU_3389 | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.611 |
| DVU_0192 | umuD | DVU_0192 | DVU_2907 | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | umuD protein; Identified by similarity to SP:P04153; match to protein family HMM PF00717; Belongs to the peptidase S24 family. | 0.521 |
| DVU_2878 | DVU_0192 | DVU_2878 | DVU_0192 | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | 0.880 |
| DVU_2878 | birA | DVU_2878 | DVU_2557 | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.479 |
| DVU_2878 | polA | DVU_2878 | DVU_0496 | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | DNA polymerase I; Identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | 0.532 |
| DVU_2878 | recA | DVU_2878 | DVU_1090 | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.417 |
| DVU_2878 | topA | DVU_2878 | DVU_3389 | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.611 |
| DVU_2878 | umuD | DVU_2878 | DVU_2907 | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | umuD protein; Identified by similarity to SP:P04153; match to protein family HMM PF00717; Belongs to the peptidase S24 family. | 0.521 |
| birA | DVU_0192 | DVU_2557 | DVU_0192 | birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | 0.479 |
| birA | DVU_2878 | DVU_2557 | DVU_2878 | birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. | 0.479 |
| birA | rpoD | DVU_2557 | DVU_1788 | birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth; Belongs to the sigma-70 factor family. RpoD/SigA subfamily. | 0.403 |
| birA | umuD | DVU_2557 | DVU_2907 | birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | umuD protein; Identified by similarity to SP:P04153; match to protein family HMM PF00717; Belongs to the peptidase S24 family. | 0.495 |
| dinP | polA | DVU_0071 | DVU_0496 | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | DNA polymerase I; Identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | 0.724 |
| dinP | recA | DVU_0071 | DVU_1090 | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.778 |
| dinP | recN | DVU_0071 | DVU_2463 | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.438 |
| dinP | topA | DVU_0071 | DVU_3389 | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.581 |
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