Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_2939Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TE1240. (295 aa)    
Predicted Functional Partners:
DVU_1062
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS02998.
  
 0.973
DVU_2772
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TE2295.
  
 0.969
DVU_2938
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NS1696; match to protein family HMM PF01837.
       0.756
cbiM
Cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891.
 
    0.738
DVU_3036
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS01164; match to protein family HMM PF04015.
 
    0.672
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
    
 0.629
DVU_3154
HAM1 family protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
 
 
    0.589
DVU_3268
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MK0862.
 
    0.525
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
   
    0.520
DVU_2940
Hypothetical protein; Identified by Glimmer2; putative.
       0.506
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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