Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Identified by match to protein family HMM PF03734 (429 aa)
Predicted Functional Partners:
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) (186 aa)
Adenylosuccinate lyase; Identified by similarity to SP-P12047; match to protein family HMM PF00206; match to protein family HMM TIGR00928; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily (430 aa)
Lipoprotein, putative; Identified by similarity to OMNI-NTL01CJ01286 (462 aa)
Conserved domain protein; Identified by similarity to GP-13926258 (285 aa)
TPR domain protein; Identified by match to protein family HMM PF00515 (1076 aa)
TPR domain protein; Identified by match to protein family HMM PF00515 (237 aa)
Uncharacterized protein; Identified by Glimmer2; putative (201 aa)
Uncharacterized protein; Identified by Glimmer2; putative (138 aa)
Uncharacterized protein; Identified by Glimmer2; putative (140 aa)
Uncharacterized protein; Identified by Glimmer2; putative (255 aa)
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882 Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough