STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2976Conserved hypothetical protein; Identified by similarity to OMNI:NT01MC0831; match to protein family HMM PF04463. (370 aa)    
Predicted Functional Partners:
DVU_0112
Deoxyribodipyrimidine photolyase, putative; Identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441.
 
  
 0.924
DVU_2977
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.581
DVU_0101
Methlytransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209.
  
  
 0.535
DVU_2974
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.472
DVU_2975
Hydrolase, putative; Identified by match to protein family HMM PF04307.
  
    0.461
DVU_1457
Thioredoxin reductase, putative; Identified by similarity to SP:Q05741; match to protein family HMM PF00070.
  
   0.458
DVU_2619
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP2311.
   
    0.433
DVU_1842
Lipoprotein, putative.
   
    0.424
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472.
       0.420
DVU_2978
Hydrolase, haloacid dehalogenase-like family; Identified by similarity to OMNI:NTL02EC4785; match to protein family HMM PF00702.
  
    0.418
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.