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pspF protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"pspF" - Psp operon transcriptional activator in Desulfovibrio vulgaris Hildenborough
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspFPsp operon transcriptional activator; Identified by similarity to SP-P37344; match to protein family HMM PF00158; match to protein family HMM TIGR01199 (381 aa)    
Predicted Functional Partners:
pspA
Identified by match to protein family HMM PF04012 (221 aa)
 
 
 
  0.814
moeA
Molybdopterin biosynthesis MoeA protein; Identified by similarity to SP-P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 (650 aa)
              0.745
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (476 aa)
 
     
  0.718
DVU_0331
Sensory box histidine kinase, putative; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229 (973 aa)
   
 
  0.595
pspC
Phage shock protein C; Identified by similarity to SP-P23855; match to protein family HMM PF04024 (140 aa)
 
          0.580
DVU_2992
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (538 aa)
     
      0.542
DVU_0449
Protein-glutamate methylesterase; Involved in the modulation of the chemotaxis system; catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR (1513 aa)
     
 
  0.466
DVU_2991
Uncharacterized protein; Identified by Glimmer2; putative (363 aa)
              0.449
DVU_2987
Uncharacterized protein; Identified by Glimmer2; putative (99 aa)
              0.420
DVU_2995
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534 (387 aa)
       
      0.410
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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