Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_2993Glycosyl transferase, group 1/2 family protein; Identified by match to protein family HMM PF00534; match to protein family HMM PF00535. (887 aa)    
Predicted Functional Partners:
DVU_2994
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.947
DVU_0552
Conserved hypothetical protein; Identified by similarity to GP:14250952; match to protein family HMM PF00535.
 
  
 0.772
DVU_2992
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.766
DVU_0697
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.734
DVU_0327
Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.
 
  
 0.733
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.713
DVU_2991
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.713
DVU_0281
Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.
 
  
 0.708
rfbB
dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.679
DVU_0346
Membrane protein, putative.
  
  
 0.677
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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