STRINGSTRING
DVU_2997 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2997" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2997Uncharacterized protein; Identified by Glimmer2; putative (258 aa)    
Predicted Functional Partners:
DVU_2996
Identified by match to protein family HMM PF01370 (307 aa)
   
      0.869
DVU_2995
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534 (387 aa)
            0.861
DVU_2998
Uncharacterized protein; Identified by Glimmer2; putative (444 aa)
              0.762
DVU_2999
Methionyl-tRNA formyltransferase, putative; Identified by match to protein family HMM PF00551 (275 aa)
   
        0.701
DVU_3002
annotation not available (382 aa)
   
   
  0.464
DVU_3006
Polysaccharide biosynthesis protein/methyltransferase, putative; Identified by similarity to SP-P39626; similar to GP-10179847; match to protein family HMM PF02348 (453 aa)
         
  0.451
DVU_3001
Conserved domain protein; Identified by similarity to OMNI-CC3255 (265 aa)
              0.417
DVU_3000
Uncharacterized protein; Identified by Glimmer2; putative (396 aa)
              0.417
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (15%) [HD]