Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_2997Hypothetical protein; Identified by Glimmer2; putative. (258 aa)    
Predicted Functional Partners:
DVU_3001
Conserved domain protein; Identified by similarity to OMNI:CC3255.
  
    0.850
DVU_2996
Identified by match to protein family HMM PF01370.
  
  
 0.808
DVU_2995
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
  
 0.797
DVU_2998
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.745
DVU_2999
methionyl-tRNA formyltransferase, putative; Identified by match to protein family HMM PF00551.
  
    0.662
DVU_0654
Peptidase, U32 family; Identified by match to protein family HMM PF01136.
  
  
 0.630
DVU_3314
Peptidase, U32 family; Identified by match to protein family HMM PF01136.
  
  
 0.630
DVU_3002
Conserved domain protein.
  
  
 0.538
DVU_3000
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.508
DVU_3011
Conserved hypothetical protein; Identified by similarity to OMNI:CC2858.
  
    0.450
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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