STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3000Hypothetical protein; Identified by Glimmer2; putative. (396 aa)    
Predicted Functional Partners:
DVU_3001
Conserved domain protein; Identified by similarity to OMNI:CC3255.
  
    0.853
DVU_3002
Conserved domain protein.
  
  
 0.804
DVU_3003
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
    0.638
DVU_2999
methionyl-tRNA formyltransferase, putative; Identified by match to protein family HMM PF00551.
  
  
 0.522
DVU_2997
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.508
DVU_3004
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
    0.504
DVU_2996
Identified by match to protein family HMM PF01370.
  
  
 0.501
DVU_3007
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.499
DVU_3008
Identified by match to protein family HMM PF03102.
  
    0.482
DVU_3010
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to GP:22095313; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.468
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.