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DVU_3000 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3000" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
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[Homology]
Score
DVU_3000Uncharacterized protein; Identified by Glimmer2; putative (396 aa)    
Predicted Functional Partners:
DVU_3002
annotation not available (382 aa)
              0.845
DVU_3001
Conserved domain protein; Identified by similarity to OMNI-CC3255 (265 aa)
              0.845
DVU_3003
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (370 aa)
              0.668
DVU_2999
Methionyl-tRNA formyltransferase, putative; Identified by match to protein family HMM PF00551 (275 aa)
              0.497
DVU_2998
Uncharacterized protein; Identified by Glimmer2; putative (444 aa)
              0.459
DVU_3004
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (624 aa)
              0.444
DVU_3005
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family (344 aa)
              0.438
DVU_3009
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (327 aa)
              0.432
DVU_3008
Identified by match to protein family HMM PF03102 (358 aa)
              0.432
DVU_3007
Uncharacterized protein; Identified by Glimmer2; putative (407 aa)
              0.432
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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