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DVU_3002 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3002" - annotation not available in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3002annotation not available (382 aa)    
Predicted Functional Partners:
DVU_3001
Conserved domain protein; Identified by similarity to OMNI-CC3255 (265 aa)
              0.845
DVU_3000
Uncharacterized protein; Identified by Glimmer2; putative (396 aa)
              0.845
DVU_3011
Uncharacterized protein; Identified by similarity to OMNI-CC2858 (264 aa)
   
 
  0.704
DVU_3003
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (370 aa)
              0.677
DVU_3006
Polysaccharide biosynthesis protein/methyltransferase, putative; Identified by similarity to SP-P39626; similar to GP-10179847; match to protein family HMM PF02348 (453 aa)
 
   
  0.675
DVU_0478
Identified by match to protein family HMM PF00149 (287 aa)
     
      0.608
DVU_0734
Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP-12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469 (503 aa)
     
   
  0.584
DVU_3008
Identified by match to protein family HMM PF03102 (358 aa)
 
     
  0.579
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism; Belongs to the SHMT family (412 aa)
     
 
  0.572
DVU_3004
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (624 aa)
              0.572
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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