STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3003Radical SAM domain protein; Identified by match to protein family HMM PF04055. (370 aa)    
Predicted Functional Partners:
DVU_3009
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
    0.879
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
   
  
 0.810
fliE
Flagellar basal body component FliE; Identified by similarity to SP:P24502; match to protein family HMM PF02049; match to protein family HMM TIGR00205.
   
   0.808
fliF
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
   
    0.737
DVU_3387
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.727
DVU_3004
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
   
0.716
DVU_3011
Conserved hypothetical protein; Identified by similarity to OMNI:CC2858.
 
    0.698
flgI
Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.685
DVU_3001
Conserved domain protein; Identified by similarity to OMNI:CC3255.
  
    0.670
DVU_3019
Radical SAM/B12 binding domain protein; Identified by similarity to SP:O58549; match to protein family HMM PF02310; match to protein family HMM PF04055.
 
  
 0.663
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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