Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_3010Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to GP:22095313; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family. (392 aa)    
Predicted Functional Partners:
DVU_3008
Identified by match to protein family HMM PF03102.
 
  
 0.858
DVU_3006
Polysaccharide biosynthesis protein/methyltransferase, putative; Identified by similarity to SP:P39626; similar to GP:10179847; match to protein family HMM PF02348.
 
  
 0.848
DVU_3011
Conserved hypothetical protein; Identified by similarity to OMNI:CC2858.
 
  
 0.841
DVU_3004
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
  
 0.825
DVU_3005
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
    
0.811
DVU_3007
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.785
DVU_3009
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
  
 0.785
DVU_2455
Identified by match to protein family HMM PF01370.
 
  
 0.742
DVU_0327
Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.
 
  
 0.655
DVU_3013
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.639
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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