STRINGSTRING
DVU_3023 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3023" - Sigma-54 dependent DNA-binding response regulator in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3023Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 (474 aa)    
Predicted Functional Partners:
DVU_3022
Sensory box histidine kinase/response regulator; Identified by similarity to OMNI-NTL01SMA00507; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 (1139 aa)
   
 
  0.899
poR
Pyruvate synthase; Identified by similarity to GP-1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855 (1215 aa)
         
  0.735
DVU_3026
Identified by similarity to SP-P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795 (570 aa)
         
  0.665
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (476 aa)
 
     
  0.655
DVU_3021
HDIG domain protein; Identified by match to protein family HMM PF01966 (456 aa)
              0.612
DVU_0331
Sensory box histidine kinase, putative; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229 (973 aa)
   
 
  0.595
DVU_3033
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754 (717 aa)
         
  0.591
DVU_2287
Hydrogenase, CooK subunit, selenocysteine-containing, putative; Selenoprotein; identified by similarity to GP-1515467; match to protein family HMM PF00146 (321 aa)
           
  0.536
DVU_3284
L-lactate permease; Identified by similarity to SP-P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795 (543 aa)
           
  0.530
DVU_2451
Identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 (570 aa)
           
  0.504
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (23%) [HD]