Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3036Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS01164; match to protein family HMM PF04015. (330 aa)    
Predicted Functional Partners:
DVU_2772
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TE2295.
 
    0.709
DVU_2939
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TE1240.
 
    0.672
DVU_1062
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS02998.
 
     0.625
DVU_3037
Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.
  
    0.557
DVU_3268
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MK0862.
  
    0.557
DVU_3022
Sensory box histidine kinase/response regulator; Identified by similarity to OMNI:NTL01SMA00507; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
     0.474
DVU_3038
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.418
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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