Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3039Conserved hypothetical protein; Identified by similarity to GP:9949385. (241 aa)    
Predicted Functional Partners:
DVU_1388
Conserved hypothetical protein; Identified by similarity to OMNI:SO1143.
  
     0.744
DVU_2662
Conserved hypothetical protein; Identified by similarity to SP:P54952.
  
     0.697
DVU_2409
Bacterial extracellular solute-binding proteins, family 3; Identified by match to protein family HMM PF00497.
  
     0.680
DVU_3139
Bacterial extracellular solute-binding protein, family 3; Identified by match to protein family HMM PF00497.
  
     0.667
DVU_0089
Conserved hypothetical protein; Identified by similarity to OMNI:VCA0583.
  
    0.665
DVU_3266
Conserved hypothetical protein.
  
     0.638
DVU_0852
Extracellular solute-binding protein, putative.
  
     0.619
DVU_2684
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.572
DVU_3040
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.514
DVU_3041
Cytochrome c553; Identified by similarity to SP:P00120; match to protein family HMM PF00034.
   
   0.409
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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