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DVU_3055 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3055" - Ribonuclease, Rne/Rng family in Desulfovibrio vulgaris Hildenborough
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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DVU_3055Ribonuclease, Rne/Rng family; Identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 (489 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (760 aa)
 
 
  0.957
DVU_1836
tRNA nucleotidyltransferase, putative; Identified by match to protein family HMM PF01743 (383 aa)
     
  0.956
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (96 aa)
       
  0.914
queH
Epoxyqueuosine reductase QueH; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) (217 aa)
              0.886
DVU_1078
R3H domain protein; Identified by match to protein family HMM PF01424 (430 aa)
       
      0.867
DVU_0838
UPF0109 protein DVU_0838; Identified by similarity to SP-Q8XJP5 (77 aa)
       
      0.867
rhlE
ATP-dependent RNA helicase RhlE; Identified by similarity to SP-P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 (462 aa)
     
 
  0.797
DVU_3057
Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound (497 aa)
   
        0.784
DVU_3054
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (364 aa)
              0.776
eno
Enolase; Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis (437 aa)
       
 
  0.757
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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