Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_3071Oxidoreductase, FAD/iron-sulfur cluster-binding domain protein; Identified by similarity to SP:P52075; match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913. (1187 aa)    
Predicted Functional Partners:
DVU_2784
Dehydrogenase, FMN-dependent family; Identified by match to protein family HMM PF01070.
  
 0.806
DVU_3033
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.
  
  
0.792
DVU_2401
Hydrogenase, iron-sulfur cluster-binding subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF02662.
  
  
 0.750
DVU_3070
Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
 
    0.723
DVU_0826
Glycolate oxidase, iron-sulfur subunit, putative; Identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754.
 
  
 0.689
DVU_3032
Conserved hypothetical protein; Identified by similarity to OMNI:HP0137; match to protein family HMM PF02589.
  
  
 0.687
mltG
Conserved hypothetical protein TIGR00247; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
    0.684
DVU_1772
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070.
  
 0.653
DVU_3107
Identified by match to protein family HMM PF00034.
 
 
 0.605
DVU_2341
Amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
   
  
 0.594
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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