STRINGSTRING
DVU_3071 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3071" - Oxidoreductase, FAD/iron-sulfur cluster-binding domain protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3071Oxidoreductase, FAD/iron-sulfur cluster-binding domain protein; Identified by similarity to SP-P52075; match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913 (1187 aa)    
Predicted Functional Partners:
DVU_2683
annotation not available (516 aa)
   
   
  0.788
DVU_3070
Putative pre-16S rRNA nuclease; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (142 aa)
 
          0.763
DVU_2784
Dehydrogenase, FMN-dependent family; Identified by match to protein family HMM PF01070 (341 aa)
   
   
  0.759
DVU_0253
Oxidoreductase, FAD/iron-sulfur cluster-binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913 (941 aa)
   
 
0.748
mltG
Endolytic murein transglycosylase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation (440 aa)
              0.716
poR
Pyruvate synthase; Identified by similarity to GP-1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855 (1215 aa)
   
   
  0.706
DVU_1781
Uncharacterized protein; Identified by similarity to OMNI-NTL01NM01533; match to protein family HMM PF02589 (221 aa)
   
   
  0.696
putA
Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family (1006 aa)
 
   
  0.668
DVU_3026
Identified by similarity to SP-P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795 (570 aa)
   
   
  0.666
DVU_2285
Identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 (506 aa)
   
   
  0.665
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (19%) [HD]