DVU_3072 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

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gene co-occurrence

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Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0291	DVU_0292	DVU_0291	DVU_0292	ABC transporter, ATP-binding protein; Identified by similarity to SP:P16676; match to protein family HMM PF00005.	Hypothetical protein; Identified by Glimmer2; putative.	0.837
DVU_0291	DVU_2779	DVU_0291	DVU_2779	ABC transporter, ATP-binding protein; Identified by similarity to SP:P16676; match to protein family HMM PF00005.	Extracellular solute-binding protein, putative; Identified by similarity to OMNI:NTL02SC3299; match to protein family HMM PF01547.	0.932
DVU_0291	DVU_3072	DVU_0291	DVU_3072	ABC transporter, ATP-binding protein; Identified by similarity to SP:P16676; match to protein family HMM PF00005.	ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.	0.990
DVU_0291	potB	DVU_0291	DVU_0097	ABC transporter, ATP-binding protein; Identified by similarity to SP:P16676; match to protein family HMM PF00005.	Polyamine ABC transporter, permease protein; Identified by similarity to SP:P23860; match to protein family HMM PF00528.	0.977
DVU_0291	potC	DVU_0291	DVU_0096	ABC transporter, ATP-binding protein; Identified by similarity to SP:P16676; match to protein family HMM PF00005.	Polyamine ABC transporter, permease protein; Identified by similarity to SP:P23859; match to protein family HMM PF00528.	0.970
DVU_0292	DVU_0291	DVU_0292	DVU_0291	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by similarity to SP:P16676; match to protein family HMM PF00005.	0.837
DVU_0292	DVU_2779	DVU_0292	DVU_2779	Hypothetical protein; Identified by Glimmer2; putative.	Extracellular solute-binding protein, putative; Identified by similarity to OMNI:NTL02SC3299; match to protein family HMM PF01547.	0.781
DVU_0292	DVU_3072	DVU_0292	DVU_3072	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.	0.784
DVU_2779	DVU_0291	DVU_2779	DVU_0291	Extracellular solute-binding protein, putative; Identified by similarity to OMNI:NTL02SC3299; match to protein family HMM PF01547.	ABC transporter, ATP-binding protein; Identified by similarity to SP:P16676; match to protein family HMM PF00005.	0.932
DVU_2779	DVU_0292	DVU_2779	DVU_0292	Extracellular solute-binding protein, putative; Identified by similarity to OMNI:NTL02SC3299; match to protein family HMM PF01547.	Hypothetical protein; Identified by Glimmer2; putative.	0.781
DVU_2779	DVU_3072	DVU_2779	DVU_3072	Extracellular solute-binding protein, putative; Identified by similarity to OMNI:NTL02SC3299; match to protein family HMM PF01547.	ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.	0.976
DVU_3071	DVU_3072	DVU_3071	DVU_3072	Oxidoreductase, FAD/iron-sulfur cluster-binding domain protein; Identified by similarity to SP:P52075; match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.	ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.	0.465
DVU_3072	DVU_0291	DVU_3072	DVU_0291	ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by similarity to SP:P16676; match to protein family HMM PF00005.	0.990
DVU_3072	DVU_0292	DVU_3072	DVU_0292	ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.	Hypothetical protein; Identified by Glimmer2; putative.	0.784
DVU_3072	DVU_2779	DVU_3072	DVU_2779	ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.	Extracellular solute-binding protein, putative; Identified by similarity to OMNI:NTL02SC3299; match to protein family HMM PF01547.	0.976
DVU_3072	DVU_3071	DVU_3072	DVU_3071	ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.	Oxidoreductase, FAD/iron-sulfur cluster-binding domain protein; Identified by similarity to SP:P52075; match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.	0.465
DVU_3072	DVU_3073	DVU_3072	DVU_3073	ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.	Conserved domain protein; Identified by similarity to OMNI:HI1195.	0.513
DVU_3072	DVU_3161	DVU_3072	DVU_3161	ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.500
DVU_3072	potA	DVU_3072	DVU_0098	ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.	Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.874
DVU_3072	potB	DVU_3072	DVU_0097	ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.	Polyamine ABC transporter, permease protein; Identified by similarity to SP:P23860; match to protein family HMM PF00528.	0.480

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