STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3072ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528. (644 aa)    
Predicted Functional Partners:
DVU_2779
Extracellular solute-binding protein, putative; Identified by similarity to OMNI:NTL02SC3299; match to protein family HMM PF01547.
 
  
  0.977
DVU_0291
ABC transporter, ATP-binding protein; Identified by similarity to SP:P16676; match to protein family HMM PF00005.
 
 
 0.974
DVU_0292
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.775
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
  
 0.679
DVU_0647
Iron compound ABC transporter, periplasmic iron compount-binding protein, putative; Identified by similarity to OMNI:DRB0007; match to protein family HMM PF01497.
   
  
 0.605
DVU_0648
Iron compound ABC transporter, ATP-binding protein; Identified by similarity to SP:P07821; match to protein family HMM PF00005.
  
  
 0.570
DVU_0103
Cation ABC transporter, ATP-binding protein, putative; Identified by similarity to OMNI:NTL02SC0434; match to protein family HMM PF00005.
   
  
 0.516
DVU_0649
Iron compound ABC transporter, permease protein; Identified by similarity to PIR:S54438; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
  
 0.513
DVU_1764
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT1482.
   
  
 0.507
DVU_3073
Conserved domain protein; Identified by similarity to OMNI:HI1195.
  
    0.496
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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