Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_3073Conserved domain protein; Identified by similarity to OMNI:HI1195. (303 aa)    
Predicted Functional Partners:
DVU_1715
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.670
DVU_2598
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.662
DVU_0907
Conserved domain protein; Identified by similarity to OMNI:NTL01BM0443.
  
     0.615
DVU_2596
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.594
DVU_1714
Conserved hypothetical protein; Identified by similarity to GP:13186158.
  
    0.586
DVU_2604
Conserved hypothetical protein; Identified by similarity to GP:13186164.
  
    0.578
DVU_1721
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.540
DVU_3072
ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.
  
    0.513
DVU_2053
Membrane protein, putative.
 
     0.507
DVU_0999
Thio:disulfide interchange protein, putative; Identified by similarity to SP:P36655; match to protein family HMM PF02683.
  
    0.482
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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