Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_3076Conserved hypothetical protein; Identified by similarity to OMNI:NTL01OI0852. (193 aa)    
Predicted Functional Partners:
DVU_3077
Identified by match to protein family HMM PF00578.
 
    0.758
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.737
DVU_0577
Formate dehydrogenase formation protein FdhE, putative; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
    0.551
DVU_2810
Formate dehydrogenase formation protein FdhE, putative; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
     0.483
DVU_2752
Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.
 
  
 0.480
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
    
   0.454
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.454
DVU_2247
Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578.
  
 
 0.451
DVU_0263
Acidic cytochrome c3; Identified by similarity to SP:P94690.
  
  
 0.448
DVU_3075
Hypothetical protein; Identified by Glimmer2; putative.
       0.429
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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