STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3076Conserved hypothetical protein; Identified by similarity to OMNI:NTL01OI0852. (193 aa)    
Predicted Functional Partners:
DVU_3077
Identified by match to protein family HMM PF00578.
 
    0.710
DVU_0577
Formate dehydrogenase formation protein FdhE, putative; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
    0.546
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
   
   0.525
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.490
DVU_2810
Formate dehydrogenase formation protein FdhE, putative; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
    0.486
DVU_2752
Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.
 
     0.473
DVU_0263
Acidic cytochrome c3; Identified by similarity to SP:P94690.
  
    0.441
DVU_0249
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSC0089.
  
    0.430
DVU_3075
Hypothetical protein; Identified by Glimmer2; putative.
       0.429
DVU_1759
Molybdenum-binding protein, HTH domain; Identified by match to protein family HMM PF02573.
  
     0.400
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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