Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Transcriptional regulator, putative; Identified by similarity to SP-Q04152 (128 aa)
Predicted Functional Partners:
Cell division protein FtsQ; Essential cell division protein (278 aa)
Uncharacterized protein; Identified by Glimmer2; putative (578 aa)
Uncharacterized protein; Identified by Glimmer2; putative (262 aa)
DafA protein; Identified by similarity to SP-P77527 (105 aa)
Uncharacterized protein; Identified by Glimmer2; putative (120 aa)
Uncharacterized protein; Identified by Glimmer2; putative (114 aa)
Uncharacterized protein; Identified by similarity to OMNI-CC1604; match to protein family HMM PF04357 (1783 aa)
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103 (776 aa)
Transcriptional regulator, ArsR family/methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01022; match to protein family HMM PF01209 (307 aa)
Cobyrinate a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family (607 aa)
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882 Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough