Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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Experiments
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[Homology]
Score
DVU_3091Conserved hypothetical protein; Identified by similarity to SP:Q9A4C3. (448 aa)    
Predicted Functional Partners:
nadA
Quinolinate synthetase complex, subunit A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
 
 0.992
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
  
  
  0.925
DVU_3014
Asparagine synthetase, glutamine-hydrolyzing; Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
   
 
 0.915
argG
Argininosuccinate synthase; Identified by similarity to GP:20150951; match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
 0.910
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
 0.910
DVU_1766
Aspartate ammonia-lyase, putative; Identified by similarity to SP:P26899; match to protein family HMM PF00206.
   
 
 0.909
aspA
Aspartate ammonia-lyase; Identified by similarity to SP:P07346; match to protein family HMM PF00206; match to protein family HMM TIGR00839.
     
 0.905
pyrB
Aspartate carbamoyltransferase; Identified by similarity to SP:P05654; match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670.
   
 
 0.903
DVU_2242
Asparaginase family protein; Identified by similarity to SP:Q47898; match to protein family HMM PF01112.
     
  0.900
nadC
Nicotinate-nucleotide pyrophosphorylase; Identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; Belongs to the NadC/ModD family.
 
  
 0.859
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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