STRINGSTRING
DVU_3095 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3095" - Ferric uptake regulation protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3095Ferric uptake regulation protein; Identified by match to protein family HMM PF01475; Belongs to the Fur family (128 aa)    
Predicted Functional Partners:
rr
Rubrerythrin; May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide (191 aa)
         
  0.810
DVU_3096
Uncharacterized protein; Identified by Glimmer2; putative (83 aa)
              0.753
rdl
Rubredoxin; Identified by match to protein family HMM PF00301; Belongs to the rubredoxin family (75 aa)
         
  0.738
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor (330 aa)
         
  0.648
DVU_3097
Outer membrane efflux protein; Identified by match to protein family HMM PF02321 (439 aa)
         
  0.635
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
         
  0.526
DVU_0665
Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (281 aa)
   
   
  0.455
DVU_3098
Uncharacterized protein; Identified by Glimmer2; putative (67 aa)
              0.441
tolQ-2
TolQ protein; Identified by similarity to SP-P05828; match to protein family HMM PF01618 (230 aa)
         
  0.414
DVU_3100
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472 (139 aa)
         
  0.411
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (14%) [HD]