Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tolQ-2tolQ protein; Identified by similarity to SP:P05828; match to protein family HMM PF01618. (230 aa)    
Predicted Functional Partners:
DVU_3100
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
 
 
 0.992
DVU_2389
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
 
 
 0.966
DVU_3101
tonB protein, putative; Identified by similarity to GP:14595286; match to protein family HMM TIGR01352.
 
 
 0.960
tolB
tolB protein, putative; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.920
pal
Peptidoglycan-associated lipoprotein, putative; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.863
DVU_2807
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
 
 
 0.853
DVU_3102
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.844
DVU_0099
TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.803
bamA
Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.754
DVU_2390
TonB domain protein; Identified by similarity to GP:19577340; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
  
 
 0.736
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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