STRINGSTRING
tolQ-2 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"tolQ-2" - TolQ protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolQ-2TolQ protein; Identified by similarity to SP-P05828; match to protein family HMM PF01618 (230 aa)    
Predicted Functional Partners:
DVU_3100
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472 (139 aa)
 
  0.991
DVU_3101
TonB protein, putative; Identified by similarity to GP-14595286; match to protein family HMM TIGR01352 (341 aa)
 
 
  0.963
DVU_2389
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472 (137 aa)
 
 
  0.942
DVU_3102
Uncharacterized protein; Identified by Glimmer2; putative (195 aa)
   
 
  0.872
tolB
Protein TolB; Involved in the TonB-independent uptake of proteins (456 aa)
 
 
  0.869
DVU_3104
Peptidoglycan-associated lipoprotein, putative; Identified by similarity to SP-P07176; match to protein family HMM PF00691; Belongs to the ompA family (167 aa)
 
 
  0.859
tolQ-1
TolQ protein; Identified by similarity to SP-P05828; match to protein family HMM PF01618 (317 aa)
   
   
 
0.815
DVU_0099
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (386 aa)
 
 
  0.785
DVU_2390
TonB domain protein; Identified by similarity to GP-19577340; match to protein family HMM PF03544; match to protein family HMM TIGR01352 (302 aa)
 
 
  0.758
DVU_2807
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472 (136 aa)
   
 
  0.737
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (18%) [HD]