STRINGSTRING
DVU_3104 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3104" - Peptidoglycan-associated lipoprotein, putative in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3104Peptidoglycan-associated lipoprotein, putative; Identified by similarity to SP-P07176; match to protein family HMM PF00691; Belongs to the ompA family (167 aa)    
Predicted Functional Partners:
tolB
Protein TolB; Involved in the TonB-independent uptake of proteins (456 aa)
 
  0.993
DVU_1422
Identified by match to protein family HMM PF00691 (357 aa)
 
 
0.942
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (791 aa)
   
 
  0.903
tolQ-2
TolQ protein; Identified by similarity to SP-P05828; match to protein family HMM PF01618 (230 aa)
 
 
  0.859
DVU_2375
Lipoprotein releasing system, permease protein; Identified by similarity to SP-P75956; match to protein family HMM PF02687 (411 aa)
   
 
  0.844
tolQ-1
TolQ protein; Identified by similarity to SP-P05828; match to protein family HMM PF01618 (317 aa)
 
 
  0.811
DVU_0461
Predicted 3-dehydroquinate synthase; Identified by similarity to OMNI-NTL01AA01322 (323 aa)
       
      0.791
DVU_2070
Cell division coordinator CpoB; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division (257 aa)
 
 
  0.775
DVU_3100
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472 (139 aa)
 
 
  0.751
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family (470 aa)
   
 
  0.743
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (14%) [HD]