Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nhaC-2Na+/H+ antiporter NhaC; Identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931. (475 aa)    
Predicted Functional Partners:
DVU_0331
Sensory box histidine kinase, putative; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
  
 0.711
DVU_2580
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.
      
 0.689
DVU_2645
Na+/H+ antiporter family protein; Identified by similarity to SP:P27611.
  
    0.643
DVU_3109
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
  
    0.474
DVU_3110
L-aspartate oxidase, putative; Identified by match to protein family HMM PF00890; match to protein family HMM PF02910.
  
  
 0.444
sodB
Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
  
 0.426
DVU_1082
3'- 5' exonuclease domain protein; Identified by match to protein family HMM PF01612.
   
 0.424
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O; Belongs to the HCP family.
      
 0.424
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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