Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3112TPR domain protein; Identified by match to protein family HMM PF00515. (267 aa)    
Predicted Functional Partners:
DVU_0311
Flagellar assembly protein FliH, putative; Identified by similarity to SP:P31068.
 
  
 0.808
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
 
  
 0.800
DVU_2937
TPR domain protein/response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00515.
 
 
 0.782
DVU_2077
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130.
  
 
   0.781
DVU_1464
Identified by match to protein family HMM PF01075.
 
     0.772
DVU_3201
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.769
DVU_1445
Flagellar hook-length control domain protein; Identified by match to protein family HMM PF02120.
  
     0.766
DVU_0318
TPR domain protein; Identified by match to protein family HMM PF00515.
 
   
 0.761
DVU_1447
CgeB family protein.
  
     0.761
DVU_0514
Identified by match to protein family HMM PF03240.
  
     0.759
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.