Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3128Lipoprotein, putative; Identified by similarity to OMNI:NTL03PA04964; match to protein family HMM PF03886. (205 aa)    
Predicted Functional Partners:
pqiB
Paraquat-inducible protein B; Identified by similarity to SP:P43671.
 
  
 0.961
DVU_3129
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.756
DVU_3249
Lipoprotein, putative; Identified by similarity to OMNI:NTL01ST1561.
 
     0.731
DVU_0243
Lipoprotein, putative; Identified by similarity to OMNI:NTL01XC3841.
 
    0.709
DVU_3130
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.562
DVU_1547
Sensory box protein; Identified by match to protein family HMM PF00785; match to protein family HMM TIGR00229.
  
    0.501
DVU_1948
Conserved hypothetical protein; Identified by similarity to GP:29541639.
  
     0.480
DVU_2390
TonB domain protein; Identified by similarity to GP:19577340; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
  
    0.448
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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