STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3136Identified by match to protein family HMM PF00881. (218 aa)    
Predicted Functional Partners:
DVU_3135
Flavodoxin-like fold domain protein; Identified by match to protein family HMM PF02525.
 
  
 0.831
DVU_0126
ABC transporter, ATP-binding protein; Identified by similarity to SP:P37624; match to protein family HMM PF00005.
  
  
 0.708
DVU_2145
Chloramphenicol acetyltransferase, putative; Identified by similarity to SP:P22616.
      
 0.700
birA
birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.670
DVU_3079
Identified by match to protein family HMM PF00903.
  
  
 0.605
DVU_0127
Membrane protein, putative; Identified by similarity to SP:P75774.
  
  
 0.602
DVU_2210
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF02624; match to protein family HMM TIGR00702.
  
  
 0.566
fadD
long-chain-fatty-acid--CoA ligase; Identified by similarity to SP:P94547; match to protein family HMM PF00501.
   
 
 0.563
DVU_3065
Identified by match to protein family HMM PF00501.
   
 
 0.563
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
  
  
 0.547
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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