STRINGSTRING
malQ protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"malQ" - 4-alpha-glucanotransferase in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
malQ4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217 (503 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily (640 aa)
 
  0.989
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose (489 aa)
 
 
  0.982
DVU_1035
annotation not available (339 aa)
 
   
  0.934
DVU_2349
Identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094 (855 aa)
 
   
  0.889
DVU_1219
Uncharacterized protein; Identified by similarity to GP-6724082 (731 aa)
   
   
  0.643
sppA
Signal peptide peptidase SppA, 36K type; Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706 (296 aa)
         
  0.482
DVU_2472
Uncharacterized protein; Identified by similarity to OMNI-NTL01TE2269; match to protein family HMM PF03065 (779 aa)
 
          0.477
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (577 aa)
              0.471
DVU_3147
6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase; Identified by similarity to GP-3309583; match to protein family HMM PF00300; match to protein family HMM PF01591 (420 aa)
   
        0.451
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (21%) [HD]