Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
DVU_3152Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (553 aa)    
Predicted Functional Partners:
cheY-2
Chemotaxis protein CheY; Identified by similarity to GP:510670; match to protein family HMM PF00072.
  
 
 
 0.806
phoB
Phosphate regulon transcriptional regulator PhoB; Identified by similarity to SP:P23620; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 
 0.791
DVU_0581
Response regulator/anti-anti-sigma factor; Identified by match to protein family HMM PF00072.
 
 
 0.787
DVU_0271
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.
 
 
 0.784
DVU_3215
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.774
DVU_0140
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.762
DVU_0145
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.760
DVU_2963
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.760
DVU_3238
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.755
DVU_2966
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.745
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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