STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3162ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P10904; match to protein family HMM PF01547. (431 aa)    
Predicted Functional Partners:
DVU_3163
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01LI0216; match to protein family HMM PF00528.
 0.999
DVU_3164
ABC transporter, permease protein; Identified by similarity to OMNI:TM0598; match to protein family HMM PF00528.
 
 0.999
DVU_3161
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 0.997
DVU_0747
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:CC1598; match to protein family HMM PF00005.
  
 
 0.916
DVU_3165
Conserved domain protein; Identified by similarity to GP:19886751.
       0.565
DVU_1219
Conserved hypothetical protein; Identified by similarity to GP:6724082.
  
  
 0.495
DVU_0981
Multiphosphoryl transfer protein, putative; Identified by similarity to SP:P23388; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF03610; match to protein family HMM PF05524; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417; Belongs to the PEP-utilizing enzyme family.
     
 0.486
birA
birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.474
DVU_3166
alanyl-tRNA synthetase family protein, putative.
       0.453
DVU_0176
Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.
 
  
 0.420
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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