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hup-4 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"hup-4" - DNA-binding protein HU in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
hup-4DNA-binding protein HU; Identified by similarity to SP-P02341; similar to SP-P08821; similar to GP-14028719; match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family (95 aa)    
Predicted Functional Partners:
DVU_1864
DNA-binding protein HU, beta subunit, putative; Identified by similarity to SP-P08821; match to protein family HMM PF00216 (93 aa)
   
 
  0.912
DVU_2973
Integration host factor, beta subunit; Identified by similarity to SP-Q06607; match to protein family HMM PF00216 (91 aa)
   
 
  0.845
hup-1
Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control (95 aa)
   
 
 
0.649
DVU_3186
Uncharacterized protein; Identified by Glimmer2; putative (273 aa)
         
  0.626
hup-3
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions (90 aa)
   
 
 
0.586
dnaA-2
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (491 aa)
     
 
  0.555
trx
Thioredoxin; Identified by similarity to SP-P06544; match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family (107 aa)
     
 
  0.518
poR
Pyruvate synthase; Identified by similarity to GP-1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855 (1215 aa)
           
  0.502
DVU_3104
Peptidoglycan-associated lipoprotein, putative; Identified by similarity to SP-P07176; match to protein family HMM PF00691; Belongs to the ompA family (167 aa)
     
 
  0.499
dnaA-1
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (437 aa)
       
 
  0.486
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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