Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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DVU_3193DNA-binding domain, excisionase family; Identified by match to protein family HMM TIGR01764. (366 aa)    
Predicted Functional Partners:
DVU_0951
Molybdopterin biosynthesis MoeA protein, putative; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
  
 0.972
DVU_0746
ABC transporter, permease protein; Identified by similarity to GP:20906056; match to protein family HMM PF00528.
 
    0.832
DVU_0745
ABC transporter, periplasmic substrate-binding protein; Identified by similarity to GP:14330288; match to protein family HMM PF01547.
 
     0.786
DVU_0978
ABC transporter, periplasmic substrate-binding protein, putative; Identified by similarity to GP:14330288.
 
     0.782
aor
Aldehyde:ferredoxin oxidoreductase, tungsten-containing; Identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730.
 
   
 0.772
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family.
  
  
 0.641
DVU_0747
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:CC1598; match to protein family HMM PF00005.
 
   
 0.601
engA
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.556
DVU_2212
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00146.
 
   
 0.552
DVU_0643
thiF protein, putative; Identified by similarity to SP:P30138; match to protein family HMM PF00899.
 
   
 0.526
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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