Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
DVU_3196Twin-arginine translocation pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409. (383 aa)    
Predicted Functional Partners:
DVU_3195
Lipoprotein, putative; Identified by similarity to OMNI:NTL01CJ01286.
 
    0.915
DVU_0949
Conserved domain protein; Identified by similarity to OMNI:NMB1475.
  
     0.531
DVU_2611
Conserved hypothetical protein.
  
     0.516
DVU_1724
Phage uncharacterized protein, putative.
  
    0.497
DVU_1339
Lipoprotein, putative.
  
    0.453
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
     
 0.433
DVU_0760
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.428
DVU_1435
Membrane protein, putative; Identified by similarity to OMNI:NTL03PA01784.
  
    0.403
DVU_1338
Conserved hypothetical protein; Identified by similarity to OMNI:SO3257.
  
     0.401
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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