Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_3201Hypothetical protein; Identified by Glimmer2; putative. (353 aa)    
Predicted Functional Partners:
DVU_1447
CgeB family protein.
 
    0.790
DVU_1465
CgeB family protein.
 
    0.787
DVU_1464
Identified by match to protein family HMM PF01075.
 
  
 0.783
DVU_0902
TPR domain protein; Identified by match to protein family HMM PF00515.
  
   
 0.775
DVU_0411
Identified by match to protein family HMM PF01075.
 
  
 0.773
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
  
     0.771
DVU_1445
Flagellar hook-length control domain protein; Identified by match to protein family HMM PF02120.
  
     0.770
DVU_0318
TPR domain protein; Identified by match to protein family HMM PF00515.
  
   
 0.769
DVU_1446
Identified by match to protein family HMM PF01075.
 
  
 0.769
DVU_3112
TPR domain protein; Identified by match to protein family HMM PF00515.
  
     0.769
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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