Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3246RND efflux system, outer membrane protein, NodT family; Identified by similarity to GP:19716262; match to protein family HMM PF02321; match to protein family HMM TIGR01845. (541 aa)    
Predicted Functional Partners:
DVU_3247
Efflux transporter, RND family, MFP subunit; Identified by similarity to GP:1707644; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.962
DVU_3248
AcrB/AcrD/AcrF family protein; Identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
 0.961
DVU_0061
Multidrug resistance protein, putative; Identified by similarity to GP:18496807; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
 0.884
DVU_2816
Multidrug resistance protein; Identified by similarity to SP:P31224; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
 0.872
DVU_0060
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.869
DVU_2817
Multidrug resistance protein; Identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.854
DVU_0437
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P76397; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.842
DVU_0125
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.720
DVU_0438
AcrB/AcrD/AcrF family protein; Identified by similarity to GP:14025566; match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.685
DVU_1018
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
  
 
 0.665
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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