STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3247Efflux transporter, RND family, MFP subunit; Identified by similarity to GP:1707644; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (389 aa)    
Predicted Functional Partners:
DVU_3248
AcrB/AcrD/AcrF family protein; Identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
 0.974
DVU_3246
RND efflux system, outer membrane protein, NodT family; Identified by similarity to GP:19716262; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
 
 0.964
DVU_0061
Multidrug resistance protein, putative; Identified by similarity to GP:18496807; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
 0.917
DVU_2816
Multidrug resistance protein; Identified by similarity to SP:P31224; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
 0.916
DVU_0062
RND efflux system, outer membrane protein, NodT family; Identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
 0.899
DVU_0438
AcrB/AcrD/AcrF family protein; Identified by similarity to GP:14025566; match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.874
DVU_2815
Outer membrane efflux protein; Identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
 0.874
DVU_2437
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01TE1382; match to protein family HMM PF02687.
 
 
 0.839
DVU_0059
Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.823
DVU_3097
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
 
 0.747
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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