Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_3249Lipoprotein, putative; Identified by similarity to OMNI:NTL01ST1561. (226 aa)    
Predicted Functional Partners:
DVU_3248
AcrB/AcrD/AcrF family protein; Identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
       0.773
DVU_3128
Lipoprotein, putative; Identified by similarity to OMNI:NTL03PA04964; match to protein family HMM PF03886.
 
     0.731
pqiB
Paraquat-inducible protein B; Identified by similarity to SP:P43671.
 
    0.708
DVU_3247
Efflux transporter, RND family, MFP subunit; Identified by similarity to GP:1707644; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.678
DVU_3246
RND efflux system, outer membrane protein, NodT family; Identified by similarity to GP:19716262; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
     0.642
DVU_0771
Molybdenum-pterin binding domain protein/site-specific recombinase, phage integrase family; Identified by similarity to SP:P46930; similar to OMNI:BR2031; match to protein family HMM PF00589; match to protein family HMM PF03459; match to protein family HMM TIGR00638.
  
     0.488
DVU_1991
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.446
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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