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DVU_3253 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3253" - Phenylacetate-coenzyme A ligase, putative in Desulfovibrio vulgaris Hildenborough
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Score
DVU_3253Phenylacetate-coenzyme A ligase, putative; Identified by similarity to SP-P76085 (421 aa)    
Predicted Functional Partners:
DVU_3254
PDZ domain protein; Identified by match to protein family HMM PF00595 (454 aa)
              0.886
DVU_3255
Transcriptional regulator, CopG family; Identified by match to protein family HMM PF01402 (132 aa)
              0.723
mutM
Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3’- and 5’-phosphates (365 aa)
              0.641
DVU_0601
Phenylacetic acid degradation protein PaaI; Identified by similarity to SP-P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369 (144 aa)
 
   
  0.638
DVU_3252
Uncharacterized protein; Identified by Glimmer2; putative (83 aa)
              0.593
DVU_3251
Membrane protein, HPP family; Identified by similarity to OMNI-NTL01SS02725; match to protein family HMM PF04982 (179 aa)
              0.452
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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