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DVU_3254 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3254" - PDZ domain protein in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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DVU_3254PDZ domain protein; Identified by match to protein family HMM PF00595 (454 aa)    
Predicted Functional Partners:
DVU_3253
Phenylacetate-coenzyme A ligase, putative; Identified by similarity to SP-P76085 (421 aa)
              0.886
DVU_3255
Transcriptional regulator, CopG family; Identified by match to protein family HMM PF01402 (132 aa)
         
  0.727
DVU_0100
TonB-dependent receptor; Identified by match to protein family HMM PF00593 (649 aa)
   
   
  0.700
mutM
Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3’- and 5’-phosphates (365 aa)
              0.642
DVU_3252
Uncharacterized protein; Identified by Glimmer2; putative (83 aa)
              0.593
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
   
        0.546
nnrD
Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family (574 aa)
              0.518
DVU_0649
Iron compound ABC transporter, permease protein; Identified by similarity to PIR-S54438; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily (351 aa)
   
   
  0.474
DVU_0742
Uncharacterized protein; Identified by Glimmer2; putative (278 aa)
   
          0.473
DVU_3022
Sensory box histidine kinase/response regulator; Identified by similarity to OMNI-NTL01SMA00507; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 (1139 aa)
 
        0.467
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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