Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3266Conserved hypothetical protein. (263 aa)    
Predicted Functional Partners:
DVU_1388
Conserved hypothetical protein; Identified by similarity to OMNI:SO1143.
  
    0.776
DVU_2662
Conserved hypothetical protein; Identified by similarity to SP:P54952.
  
     0.770
DVU_0852
Extracellular solute-binding protein, putative.
  
     0.756
DVU_2409
Bacterial extracellular solute-binding proteins, family 3; Identified by match to protein family HMM PF00497.
  
     0.746
DVU_0721
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
  
 0.655
DVU_3039
Conserved hypothetical protein; Identified by similarity to GP:9949385.
  
     0.638
DVU_3267
Hypothetical protein; Identified by Glimmer2; putative.
       0.560
DVU_2968
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
     0.540
DVU_2079
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
    0.512
DVU_0722
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966.
 
     0.499
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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