Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_3272TPR domain protein; Identified by match to protein family HMM PF00515. (207 aa)    
Predicted Functional Partners:
DVU_3273
Conserved hypothetical protein; Identified by similarity to GP:944973.
 
  
 0.935
DVU_3274
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.933
DVU_3275
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.792
DVU_1583
TPR domain protein; Identified by match to protein family HMM PF00515.
 
 
 0.784
dsvD
Dissimilatory sulfite reductase B; May play an essential role in dissimilatory sulfite reduction.
 
  
 0.739
DVU_2628
TPR domain protein; Identified by match to protein family HMM PF00515.
  
     0.674
DVU_2579
TPR domain protein; Identified by match to protein family HMM PF00515.
 
 
 0.659
DVU_2937
TPR domain protein/response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00515.
  
     0.659
DVU_3276
Identified by similarity to SP:P08813; match to protein family HMM PF00037.
 
     0.651
DVU_2763
TPR/GGDEF domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 
 0.645
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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