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DVU_3300 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3300" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3300Uncharacterized protein; Identified by Glimmer2; putative (97 aa)    
Predicted Functional Partners:
DVU_3299
Probable membrane transporter protein; Identified by match to protein family HMM PF01925 (356 aa)
              0.871
DVU_3298
Uncharacterized protein; Identified by Glimmer2; putative (260 aa)
              0.826
DVU_3301
Uncharacterized protein; Identified by Glimmer2; putative (180 aa)
              0.678
DVU_3302
Uncharacterized protein; Identified by Glimmer2; putative (108 aa)
              0.613
DVU_3303
Endopeptidase La; Identified by match to protein family HMM PF00004; match to protein family HMM PF00072; match to protein family HMM PF05362; Belongs to the peptidase S16 family (702 aa)
              0.469
DVU_3297
Tryptophan-specific transport protein; Identified by similarity to SP-P22306; match to protein family HMM PF03222; match to protein family HMM TIGR00837 (419 aa)
              0.433
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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