Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3300Hypothetical protein; Identified by Glimmer2; putative. (97 aa)    
Predicted Functional Partners:
DVU_3298
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.941
DVU_3301
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.927
DVU_3299
Membrane protein, putative; Identified by match to protein family HMM PF01925.
  
    0.780
DVU_3302
Hypothetical protein; Identified by Glimmer2; putative.
       0.552
DVU_3303
ATP-dependent protease La, truncation; Identified by match to protein family HMM PF00004; match to protein family HMM PF00072; match to protein family HMM PF05362.
  
    0.493
DVU_3297
Tryptophan-specific transport protein; Identified by similarity to SP:P22306; match to protein family HMM PF03222; match to protein family HMM TIGR00837.
       0.415
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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